Release notes
The current datasets were uploaded on 2017-02-16, using data from dbSNP build 149 (GRCh38p7). The previous datasets from 2016-06-09, 2016-02-03, 2015-12-02, 2015-04-09 and 2014-06-24 can still be found in the
old directory
The file with the neutral single nucleotide variants from 2015-12-02, missense_2015-12-02.tgz, contained errors and was replaced by a corrected version, missense_2016-01-12.tgz.
In the following table the numbers of variants per dataset are presented:
Number of variants in VariSNP datasets
| Dataset |
from dbSNP build 149 |
from dbSNP build 147 |
from dbSNP build 146 |
from dbSNP build 144 |
from dbSNP build 142 |
from dbSNP build 137/138 |
| single nucleotide variants |
446,013 |
247,364 |
246,270 |
235,911 |
222,349 |
78,951 |
| non-coding transcript variants |
956,958 |
662,961 |
632,441 |
656,451 |
316,117 |
53,957 |
| downstream variants 500B |
470,473 |
467,359 |
470,321 |
449,741 |
292,023 |
47,711 |
| frameshift variants |
3,802 |
3,769 |
3,736 |
3,553 |
3,135 |
20 |
| cds-indel variants |
9,285 |
11,155 |
11,310 |
10,996 |
8446 |
306 |
| splice acceptor variants |
3,402 |
2,787 |
2,773 |
2,656 |
1,645 |
388 |
| splice donor variants |
5,277 |
4,052 |
3,977 |
3,826 |
2,695 |
543 |
| stop gained variants |
11,339 |
5,372 |
5,395 |
5,561 |
4,174 |
1,282 |
| stop lost variants |
588 |
426 |
425 |
401 |
309 |
97 |
| synonymous codon variants |
318,967 |
198,224 |
198,557 |
191,075 |
185,845 |
91,462 |
| upstream variants 2KB |
1,804,501 |
1,753,114 |
1,748,697 |
1,672,935 |
1,194,169 |
230,424 |
| utr-3-prime variants |
610,396 |
519,993 |
517,421 |
494,459 |
443,537 |
110,032 |
| intron variants |
25,930,776 |
25,036,396 |
25,026,872 |
24,118,874 |
20,674,766 |
5,272,189 |
Updated 2017-02-16 by Gerard Schaafsma