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 - databases for immunodeficiency-causing variations

   AIREbase
   Variation registry for  Autoimmune polyendocrinopathy with candidiasis and ectodermal dystrophy (APECED)


Codon changes - AIREbase

  a
a
a		 a
a
c		 a
a
g		 a
a
t		 a
c
a		 a
c
c		 a
c
g		 a
c
t		 a
g
a		 a
g
c		 a
g
g		 a
g
t		 a
t
a		 a
t
c		 a
t
g		 a
t
t		 c
a
a		 c
a
c		 c
a
g		 c
a
t		 c
c
a		 c
c
c		 c
c
g		 c
c
t		 c
g
a		 c
g
c		 c
g
g		 c
g
t		 c
t
a		 c
t
c		 c
t
g		 c
t
t		 g
a
a		 g
a
c		 g
a
g		 g
a
t		 g
c
a		 g
c
c		 g
c
g		 g
c
t		 g
g
a		 g
g
c		 g
g
g		 g
g
t		 g
t
a		 g
t
c		 g
t
g		 g
t
t		 t
a
a		 t
a
c		 t
a
g		 t
a
t		 t
c
a		 t
c
c		 t
c
g		 t
c
t		 t
g
a		 t
g
c		 t
g
g		 t
g
t		 t
t
a		 t
t
c		 t
t
g		 t
t
t		 Total
aaa                                                                 0
aac                                                                 0
aag                                   1                             1
aat                                                                 0
aca                                                                 0
acc                                                                 0
acg               3                                                 3
act                                                                 0
aga                                                                 0
agc                                                                 0
agg                                                                 0
agt                                                                 0
ata                                                                 0
atc                                                                 0
atg                                               2               2 4
att                                                                 0
caa                                                                 0
cac                                                                 0
cag                                                   7             11
cat                                                                 0
cca                                                                 1
ccc                                                                 0
ccg                               6                                 6
cct                                                                 0
cga                                                         222       222
cgc                              1                           3      4
cgg                       1                                   2     3
cgt                                                                 0
cta                                                                 0
ctc                                                                 0
ctg                       5   2                                     8
ctt                                                                 0
gaa                                                                 0
gac                                                                 0
gag   1                                                             1
gat                                                                 0
gca                                                                 0
gcc                                              1                  1
gcg                                                                 0
gct                                                                 0
gga                                                                 0
ggc                                                                 0
ggg                                                           6     6
ggt                                                                 0
gta                                                                 0
gtc                                                                 0
gtg               1                           4                     5
gtt                                                                 0
taa                                                                 0
tac                                                                 0
tag                                                                 0
tat                                                            2    2
tca                                                                 0
tcc                                                                 0
tcg                                                                 0
tct                                                                 0
tga                                                                 0
tgc                                                                 0
tgg           6               15                                     21
tgt                                            1            2       3
tta                                                                 0
ttc                                                      1          1
ttg                                                                 0
ttt                                                                 0
Total 0010000000600040400000610017001700010000000410120007001002243820020303

-->(%) a
a
a		 a
a
c		 a
a
g		 a
a
t		 a
c
a		 a
c
c		 a
c
g		 a
c
t		 a
g
a		 a
g
c		 a
g
g		 a
g
t		 a
t
a		 a
t
c		 a
t
g		 a
t
t		 c
a
a		 c
a
c		 c
a
g		 c
a
t		 c
c
a		 c
c
c		 c
c
g		 c
c
t		 c
g
a		 c
g
c		 c
g
g		 c
g
t		 c
t
a		 c
t
c		 c
t
g		 c
t
t		 g
a
a		 g
a
c		 g
a
g		 g
a
t		 g
c
a		 g
c
c		 g
c
g		 g
c
t		 g
g
a		 g
g
c		 g
g
g		 g
g
t		 g
t
a		 g
t
c		 g
t
g		 g
t
t		 t
a
a		 t
a
c		 t
a
g		 t
a
t		 t
c
a		 t
c
c		 t
c
g		 t
c
t		 t
g
a		 t
g
c		 t
g
g		 t
g
t		 t
t
a		 t
t
c		 t
t
g		 t
t
t		 Total
aaa                                                                 0
aac                                                                 0
aag                                                                 0
aat                                                                 0
aca                                                                 0
acc                                                                 0
acg               1                                                 1
act                                                                 0
aga                                                                 0
agc                                                                 0
agg                                                                 0
agt                                                                 0
ata                                                                 0
atc                                                                 0
atg                                               1               1 1
att                                                                 0
caa                                                                 0
cac                                                                 0
cag                                                   2             4
cat                                                                 0
cca                                                                 0
ccc                                                                 0
ccg                               2                                 2
cct                                                                 0
cga                                                         73       73
cgc                                                          1      1
cgg                                                           1     1
cgt                                                                 0
cta                                                                 0
ctc                                                                 0
ctg                       2   1                                     3
ctt                                                                 0
gaa                                                                 0
gac                                                                 0
gag                                                                 0
gat                                                                 0
gca                                                                 0
gcc                                                                 0
gcg                                                                 0
gct                                                                 0
gga                                                                 0
ggc                                                                 0
ggg                                                           2     2
ggt                                                                 0
gta                                                                 0
gtc                                                                 0
gtg                                           1                     2
gtt                                                                 0
taa                                                                 0
tac                                                                 0
tag                                                                 0
tat                                                            1    1
tca                                                                 0
tcc                                                                 0
tcg                                                                 0
tct                                                                 0
tga                                                                 0
tgc                                                                 0
tgg           2               5                                     7
tgt                                                         1       1
tta                                                                 0
ttc                                                                 0
ttg                                                                 0
ttt                                                                 0
Total 00000000002000101000002000600020000000000010001000200000741310010100
    indicates codon change that require more complex mutation than single nucleotide substitution.
    indicates codon change that single nucleotide doesn't change amino acid (silent mutation).


This site is updated by Gerard Schaafsma
© Protein Structure and Bioinformatics, Lund University, 2017
Last modified 17.04.2024