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- databases for immunodeficiency-causing variations

   CFHbase
   Variation registry for  Factor H deficiency


Codon changes - CFHbase

  a
a
a
a
a
c
a
a
g
a
a
t
a
c
a
a
c
c
a
c
g
a
c
t
a
g
a
a
g
c
a
g
g
a
g
t
a
t
a
a
t
c
a
t
g
a
t
t
c
a
a
c
a
c
c
a
g
c
a
t
c
c
a
c
c
c
c
c
g
c
c
t
c
g
a
c
g
c
c
g
g
c
g
t
c
t
a
c
t
c
c
t
g
c
t
t
g
a
a
g
a
c
g
a
g
g
a
t
g
c
a
g
c
c
g
c
g
g
c
t
g
g
a
g
g
c
g
g
g
g
g
t
g
t
a
g
t
c
g
t
g
g
t
t
t
a
a
t
a
c
t
a
g
t
a
t
t
c
a
t
c
c
t
c
g
t
c
t
t
g
a
t
g
c
t
g
g
t
g
t
t
t
a
t
t
c
t
t
g
t
t
t
Total
aaa     1                                                           1
aac                                                                 0
aag                                                                 0
aat 1                                                               1
aca         1                                                       1
acc                                                                 0
acg               1                                                 1
act                                                                 0
aga                                         1                       1
agc                                                                 0
agg            3                              1                     4
agt                                                                 0
ata                                                                 0
atc                                                                 0
atg                                                                 0
att                                                                 0
caa                                 2                               2
cac                                                                 0
cag                    2                              9             11
cat                            2                                    2
cca                                                     1           1
ccc                                                                 0
ccg                                                                 0
cct                                                        2        2
cga                 3                       5                       10
cgc                                                                 0
cgg                                                                 0
cgt                                4                           8    12
cta                                                                 0
ctc                                                                 0
ctg                                                                 0
ctt                            1                                   12
gaa 1                                   1           9               11
gac                                          1                      1
gag                                                                 0
gat                                                                 0
gca                                                                 0
gcc                                                                 0
gcg                                                                 0
gct                                                                 0
gga                                                                 0
ggc                                                                 0
ggg                                                                 0
ggt                                    2                            2
gta                                                                 0
gtc                                                                 0
gtg                                                                 0
gtt                                        10   1                    11
taa                                                                 0
tac                                                                 0
tag                                                                 0
tat                    1               1            8              111
tca                                                         1       1
tcc                                                                 0
tcg                                                           1   16 17
tct                                                                 0
tga                                                                 0
tgc          1               2                                1     4
tgg           1               1                                1  2 5
tgt            2                                       4   2  1     9
tta                                                                 0
ttc                                                                 0
ttg                                                                 0
ttt                                                        1        1
Total 2000100011150010300300002213000420031001061110000170941005103900182124

-->(%) a
a
a
a
a
c
a
a
g
a
a
t
a
c
a
a
c
c
a
c
g
a
c
t
a
g
a
a
g
c
a
g
g
a
g
t
a
t
a
a
t
c
a
t
g
a
t
t
c
a
a
c
a
c
c
a
g
c
a
t
c
c
a
c
c
c
c
c
g
c
c
t
c
g
a
c
g
c
c
g
g
c
g
t
c
t
a
c
t
c
c
t
g
c
t
t
g
a
a
g
a
c
g
a
g
g
a
t
g
c
a
g
c
c
g
c
g
g
c
t
g
g
a
g
g
c
g
g
g
g
g
t
g
t
a
g
t
c
g
t
g
g
t
t
t
a
a
t
a
c
t
a
g
t
a
t
t
c
a
t
c
c
t
c
g
t
c
t
t
g
a
t
g
c
t
g
g
t
g
t
t
t
a
t
t
c
t
t
g
t
t
t
Total
aaa     1                                                           1
aac                                                                 0
aag                                                                 0
aat 1                                                               1
aca         1                                                       1
acc                                                                 0
acg               1                                                 1
act                                                                 0
aga                                         1                       1
agc                                                                 0
agg            2                              1                     3
agt                                                                 0
ata                                                                 0
atc                                                                 0
atg                                                                 0
att                                                                 0
caa                                 2                               2
cac                                                                 0
cag                    2                              7             9
cat                            2                                    2
cca                                                     1           1
ccc                                                                 0
ccg                                                                 0
cct                                                        2        2
cga                 2                       4                       8
cgc                                                                 0
cgg                                                                 0
cgt                                3                           6    10
cta                                                                 0
ctc                                                                 0
ctg                                                                 0
ctt                            1                                   12
gaa 1                                   1           7               9
gac                                          1                      1
gag                                                                 0
gat                                                                 0
gca                                                                 0
gcc                                                                 0
gcg                                                                 0
gct                                                                 0
gga                                                                 0
ggc                                                                 0
ggg                                                                 0
ggt                                    2                            2
gta                                                                 0
gtc                                                                 0
gtg                                                                 0
gtt                                        8   1                    9
taa                                                                 0
tac                                                                 0
tag                                                                 0
tat                    1               1            6              19
tca                                                         1       1
tcc                                                                 0
tcg                                                           1   13 14
tct                                                                 0
tga                                                                 0
tgc          1               2                                1     3
tgg           1               1                                1  2 4
tgt            2                                       3   2  1     7
tta                                                                 0
ttc                                                                 0
ttg                                                                 0
ttt                                                        1        1
Total 200010001114001020020000221200032002100851110000140731004102700152100
    indicates codon change that require more complex mutation than single nucleotide substitution.
    indicates codon change that single nucleotide doesn't change amino acid (silent mutation).




This site is updated by Gerard Schaafsma
© Protein Structure and Bioinformatics, Lund University, 2017
Last modified 17.04.2024