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 - databases for immunodeficiency-causing variations

   CTSCbase
   Variation registry for  Papillon-Lefevre syndrome


Codon changes - CTSCbase

  a
a
a		 a
a
c		 a
a
g		 a
a
t		 a
c
a		 a
c
c		 a
c
g		 a
c
t		 a
g
a		 a
g
c		 a
g
g		 a
g
t		 a
t
a		 a
t
c		 a
t
g		 a
t
t		 c
a
a		 c
a
c		 c
a
g		 c
a
t		 c
c
a		 c
c
c		 c
c
g		 c
c
t		 c
g
a		 c
g
c		 c
g
g		 c
g
t		 c
t
a		 c
t
c		 c
t
g		 c
t
t		 g
a
a		 g
a
c		 g
a
g		 g
a
t		 g
c
a		 g
c
c		 g
c
g		 g
c
t		 g
g
a		 g
g
c		 g
g
g		 g
g
t		 g
t
a		 g
t
c		 g
t
g		 g
t
t		 t
a
a		 t
a
c		 t
a
g		 t
a
t		 t
c
a		 t
c
c		 t
c
g		 t
c
t		 t
g
a		 t
g
c		 t
g
g		 t
g
t		 t
t
a		 t
t
c		 t
t
g		 t
t
t		 Total
aaa                                                 2               2
aac                                                                 0
aag                                                                 0
aat                                                                 0
aca             3                                                   3
acc                                                                 0
acg                                                                 0
act                                                                 0
aga                                                                 0
agc  1                                                              1
agg                                                                 0
agt                                                                 0
ata                                                                 0
atc                                                                 0
atg                                                                 0
att                                                                 0
caa                         2   2                                   4
cac                                                                 0
cag                           26                       12             38
cat    4                   1   4                                    9
cca                                                                 0
ccc                                                                 0
ccg                                                                 0
cct                                2                                2
cga                                                         10       10
cgc                                                                 0
cgg                                                                 0
cgt                    1   18                                   14    33
cta                                                                 0
ctc                                                                 0
ctg                           1                                     1
ctt                        8                                        8
gaa                                         2                       2
gac                                                  2              2
gag                                           1                     1
gat                                                                 0
gca                                                                 0
gcc                                                                 0
gcg                                                                 0
gct                                                                 0
gga         10                       1                               11
ggc          15                                   3                  18
ggg                           1                                     1
ggt                                                                 0
gta                                                                 0
gtc                                                                 0
gtg                                                                 0
gtt                                                                22
taa                                                                 0
tac  2                                              2 1             5
tag                                                                 0
tat                    4                              6        11    21
tca                     1                                           1
tcc                                                                 0
tcg                                                                 0
tct                                                                 2
tga                                                                 0
tgc                                                         15       15
tgg                                                   8   9 41      22
tgt                                                    1            1
tta                                                                 0
ttc                                                                 0
ttg                                                                 0
ttt                                                                 0
Total 03040000101500300000051002720284200210000000201003004227100903110250002215

-->(%) a
a
a		 a
a
c		 a
a
g		 a
a
t		 a
c
a		 a
c
c		 a
c
g		 a
c
t		 a
g
a		 a
g
c		 a
g
g		 a
g
t		 a
t
a		 a
t
c		 a
t
g		 a
t
t		 c
a
a		 c
a
c		 c
a
g		 c
a
t		 c
c
a		 c
c
c		 c
c
g		 c
c
t		 c
g
a		 c
g
c		 c
g
g		 c
g
t		 c
t
a		 c
t
c		 c
t
g		 c
t
t		 g
a
a		 g
a
c		 g
a
g		 g
a
t		 g
c
a		 g
c
c		 g
c
g		 g
c
t		 g
g
a		 g
g
c		 g
g
g		 g
g
t		 g
t
a		 g
t
c		 g
t
g		 g
t
t		 t
a
a		 t
a
c		 t
a
g		 t
a
t		 t
c
a		 t
c
c		 t
c
g		 t
c
t		 t
g
a		 t
g
c		 t
g
g		 t
g
t		 t
t
a		 t
t
c		 t
t
g		 t
t
t		 Total
aaa                                                 1               1
aac                                                                 0
aag                                                                 0
aat                                                                 0
aca             1                                                   1
acc                                                                 0
acg                                                                 0
act                                                                 0
aga                                                                 0
agc                                                                 0
agg                                                                 0
agt                                                                 0
ata                                                                 0
atc                                                                 0
atg                                                                 0
att                                                                 0
caa                         1   1                                   2
cac                                                                 0
cag                           12                       6             18
cat    2                       2                                    4
cca                                                                 0
ccc                                                                 0
ccg                                                                 0
cct                                1                                1
cga                                                         5       5
cgc                                                                 0
cgg                                                                 0
cgt                        8                                   7    15
cta                                                                 0
ctc                                                                 0
ctg                                                                 0
ctt                        4                                        4
gaa                                         1                       1
gac                                                  1              1
gag                                                                 0
gat                                                                 0
gca                                                                 0
gcc                                                                 0
gcg                                                                 0
gct                                                                 0
gga         5                                                       5
ggc          7                                   1                  8
ggg                                                                 0
ggt                                                                 0
gta                                                                 0
gtc                                                                 0
gtg                                                                 0
gtt                                                                11
taa                                                                 0
tac  1                                              1               2
tag                                                                 0
tat                    2                              3        5    10
tca                                                                 0
tcc                                                                 0
tcg                                                                 0
tct                                                                 1
tga                                                                 0
tgc                                                         7       7
tgg                                                   4   4 2       10
tgt                                                                 0
tta                                                                 0
ttc                                                                 0
ttg                                                                 0
ttt                                                                 0
Total 010200005700100000020001310132100100000000100001002113000401400120001100
    indicates codon change that require more complex mutation than single nucleotide substitution.
    indicates codon change that single nucleotide doesn't change amino acid (silent mutation).


This site is updated by Gerard Schaafsma
© Protein Structure and Bioinformatics, Lund University, 2017
Last modified 17.04.2024