Standards and guidelines
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VariO (Variation Ontology) is an ontology for standardized, systematic description of effects, consequences and mechanisms of variations.
http://variationontology.org
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MIASM
Minumum Information About Somatic Mutation
/MIASM/miasm.html
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HVP Guidelines
Gene/Disease Specific Variant Database Quality Parameters
http://www.humanvariomeproject.org/finish/19/255.html
Disclaimer Statements for Gene/Disease Specific Databases
http://www.humanvariomeproject.org/finish/19/273.html
Variant Terminology and Exon Numbering
http://www.humanvariomeproject.org/finish/19/352.html
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Human Variome Project quality assessment criteria for variation databases.
Vihinen M, Hancock JM, Maglott DR, Landrum MJ, Schaafsma GCP, Taschner P, 2016. Hum Mutat. 37:549-558 PubMed
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Guidelines for reporting and using prediction tools for genetic variation analysis.
Vihinen M, 2013. Hum Mutat. 34:275-282 PubMed
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Guidelines for establishing locus specific databases.
Vihinen M, den Dunnen JT, Dalgleish R, Cotton RG, 2012. Hum Mutat 33:298-305 PubMed
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Curating gene variant databases (LSDBs): toward a universal standard.
Celli J, Dalgleish R, Vihinen M, Taschner PEM, den Dunnen JT, 2012. Hum Mutat 33:291-297 PubMed
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Human Variome Project country nodes: documenting genetic information within a country.
Patrinos GP, Smith TD, Howard H, Al-Mulla F, Chouchane L, Hadjisavvas A, Hamed SA, Li XT, Marafie M, Ramesar RS, Ramos FJ, de Ravel T, El-Ruby MO, Shrestha TR, Sobrido MJ, Tadmouri G, Witsch-Baumgartner M, Zilfalil BA, Auerbach AD, Carpenter K, Cutting GR, Dung VC, Grody W, Hasler J, Jorde L, Kaput J, Macek M, Matsubara Y, Padilla C, Robinson H, Rojas-Martinez A, Taylor GR, Vihinen M, Weber T, Burn J, Qi M, Cotton RG, Rimoin D; International Confederation of Countries Advisory Council, 2012. Hum Mutat 33:1513-1519 PubMed
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Recommendations for locus-specific databases and their curation.
Cotton RG, Auerbach AD, Beckmann JS, Blumenfeld OO, Brookes AJ, Brown AF, Carrera P, Cox DW, Gottlieb B, Greenblatt MS, Hilbert P, Lehvaslaiho H, Liang P, Marsh S, Nebert DW, Povey S, Rossetti S, Scriver CR, Summar M, Tolan DR, Verma IC, Vihinen M, den Dunnen JT, 2008. Hum Mutat 29:2-5 PubMed
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